PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G048500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 407aa    MW: 42808.2 Da    PI: 5.8433
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G048500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.85.7e-91324064374
                GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaalklfsevs 88 
                         l+l+cA  ++ gd   a+++  ++   a p+gd+  Rla++f++ALa+r+ +  ++     +  ++++         + +++a+ +++++ 
  Sevir.1G048500.1.p  32 LVLACAGLLHRGDVDGARRAAGEVLSAADPRGDAADRLAHHFARALARRVDGGDDKAGGEEEDATSAPAGaaptvpGAPSATAYLAYNQIA 122
                         789***********************************************994444432222222221113455568888899999***** PP

                GRAS  89 PilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                         P+l+f+hltaNq Il+a++    +r+Hi+D+d+ +G+QWp+Llqa+a+R     gpp++RiTg g+    +++ l +tg+rL+ fA++l++
  Sevir.1G048500.1.p 123 PFLRFAHLTANQVILDAAAATgaRRLHIVDLDAAHGVQWPPLLQAFADRVdpdLGPPEVRITGAGP----DHDVLLRTGDRLRAFASSLNL 209
                         ****************9876655**************************966667***********....********************* PP

                GRAS 175 pfefnvl...vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerfle 259
                         pf+f++l    +++l+      L+++p+E+laVn+vl lh+l   ++++     ++L+ vks++P vv+++e+ea+ ++    ++ +r++ 
  Sevir.1G048500.1.p 210 PFHFHPLplpCTTQLAGDPAAVLELHPDETLAVNCVLFLHKLG-GEGEI----AAFLSWVKSMNPAVVTLAEREASVGRDcpeDLHRRVAA 295
                         *******776666777778899********************8.34444....66*******************9997755569******* PP

                GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349
                         a++yysa+fd+lea++p+ s +r +vEre+lg+ei +vva   a    r++ +e+W ++ ++aG++p pls +a   a+lllr ++ s+gy
  Sevir.1G048500.1.p 296 AMDYYSAVFDALEATVPPGSADRLSVEREVLGQEIDEVVAPGRAG--GRTRGFESWAAAARAAGLSPRPLSAFA---ARLLLRLHYpSEGY 381
                         ****************************************99998..9***********************987...79************ PP

                GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
                           ee +g+ +lgW++rpL+svS+W+
  Sevir.1G048500.1.p 382 VAEEARGACFLGWQTRPLMSVSSWQ 406
                         ************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.8833388IPR005202Transcription factor GRAS
PfamPF035142.0E-8832406IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MLGAPRHDGD AAARARHQEQ DAAAAPSSPR GLVLACAGLL HRGDVDGARR AAGEVLSAAD  60
PRGDAADRLA HHFARALARR VDGGDDKAGG EEEDATSAPA GAAPTVPGAP SATAYLAYNQ  120
IAPFLRFAHL TANQVILDAA AATGARRLHI VDLDAAHGVQ WPPLLQAFAD RVDPDLGPPE  180
VRITGAGPDH DVLLRTGDRL RAFASSLNLP FHFHPLPLPC TTQLAGDPAA VLELHPDETL  240
AVNCVLFLHK LGGEGEIAAF LSWVKSMNPA VVTLAEREAS VGRDCPEDLH RRVAAAMDYY  300
SAVFDALEAT VPPGSADRLS VEREVLGQEI DEVVAPGRAG GRTRGFESWA AAARAAGLSP  360
RPLSAFAARL LLRLHYPSEG YVAEEARGAC FLGWQTRPLM SVSSWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-505540629375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645407.10.0PREDICTED: protein MONOCULM 1-like
RefseqXP_008645406.10.0PREDICTED: protein MONOCULM 1-like
SwissprotQ84MM91e-142MOC_ORYSJ; Protein MONOCULM 1
TrEMBLK3Z0750.0K3Z075_SETIT; Uncharacterized protein
STRINGSi019936m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.16e-65GRAS family protein